HsaALTA1042098-2/6 @ hg38
Alternative 3'ss
Gene
ENSG00000165416 | SUGT1
Description
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:HGNC Symbol;Acc:HGNC:16987]
Coordinates
chr13:52659179-52661570:+
Coord C1 exon
chr13:52659179-52659249
Coord A exon
chr13:52661475-52661477
Coord C2 exon
chr13:52661478-52661570
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
GCTAATTTTTGTATTTTTAGTAG
3' ss Score
3.6
Exon sequences
Seq C1 exon
AATATGTGAATACCATGAAAAAAACTATGCTGCTGCCCTAGAAACTTTTACAGAAGGACAAAAATTAGATA
Seq A exon
TAG
Seq C2 exon
AGACGGGGTTTCATCGTGTTGGCCAGGCTGGTCTCCAACTCTTGACCTCAAGTGATCCACCTGCCTTGGACTCCCAAAGTGCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165416-15-16,15-15,15-14,15-13,15-12,15-11-2/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(45.3=100)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGCCCTAGAAACTTT
R:
GCAGGTGGATCACTTGAGGTC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains