HsaALTA1042682-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr11:123728133-123729214:-
Coord C1 exon
chr11:123729126-123729214
Coord A exon
chr11:123728221-123728262
Coord C2 exon
chr11:123728133-123728220
Length
42 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
AAATCCTTATGTGGTTTCAGGGA
3' ss Score
5.95
Exon sequences
Seq C1 exon
AGGTCCCAGTGCCCGAGGACCCAGACCTTCCTGCAGAGAGGAGCTCTGGAGACTCAGAGATGGTTGCTCTTCTTACTGCTCTGTCACAG
Seq A exon
GGACTGGTAACGTTCAAGGATGTGGCCGTATGCTTTTCCCAG
Seq C2 exon
GACCAGTGGAGTGATCTGGACCCAACACAGAAAGAGTTCTATGGAGAATATGTCTTGGAAGAAGACTGTGGAATTGTTGTCTCTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261-23-19,23-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=93.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCTTCCTGCAGAGAGGA
R:
ACAACAATTCCACAGTCTTCTTCCA
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains