HsaALTA1042901-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000166529 | ZSCAN21
Description
zinc finger and SCAN domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13104]
Coordinates
chr7:100063788-100064183:+
Coord C1 exon
chr7:100063788-100063979
Coord A exon
NA
Coord C2 exon
chr7:100064083-100064183
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TCAAATCTCACCAAACACAGGAG
3' ss Score
2.12
Exon sequences
Seq C1 exon
ATTGCAGATTGAGTACCCAGCACGAGGAATCAGCAGATGAGCAGAAAGGTTCTGAAGCAGAGGGGCTCAAAGGGGATATAATTTCTGTGATTATCGCCAATAAACCTGAGGCCAGCTTAGAGAGGCAGTGCGTAAACCTTGAAAATGAAAAAGGAACAAAACCCCCTCTTCAAGAGGCAGGCTCCAAGAAAG
Seq A exon
NA
Seq C2 exon
GAGAACACACACTGGGGAGAAACCTTACGTGTGCACCAAGTGTGGGAAAGCTTTCAGCCACAGCTCAAACCTCACCCTCCACTACAGAACACACTTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166529-19-18,19-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=NA C2=0.492
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=8.7)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAGAGGCAGGCTCCAAG
R:
GAGGGTGAGGTTTGAGCTGTG
Band lengths:
104-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains