HsaALTA1043269-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127727270-127729668:+
Coord C1 exon
chr9:127727270-127727465
Coord A exon
chr9:127729328-127729580
Coord C2 exon
chr9:127729581-127729668
Length
253 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
AACTAATTTTCATTTTGCAGTTG
3' ss Score
7.5
Exon sequences
Seq C1 exon
GATGCTTAAACGGCACGAGTTGGAGCGCCAGAAGGCCTTGGCCCTGCAGCACTCATGGAAGCAGGGGGAGCCTTTGATTGCGACCTCCGAGGAGCTGAAGGCCACCCCTGAGATTCCGCAGGTAAAACCGGGAAGCTCAGAGGGAGAGGCTGAGGCCCCTGAGGAGGAGGAAGAAAAGGAGAAGGAGAAAAAAGAG
Seq A exon
TTGAAAAAAACCAAGGCGCTAGCAGCTCCTTCAACACAACCGTTCTCACGGCACCATGCCTGTCTAGCCTGGTCGCTCCCCTTCCTGCCAGGCTTAGCCTCTGCGTGTCCCCACCCCACTCTAACCTGGCACCTTCAAAGACCTCCAAGCTCAGGAGAATGACCACCGAGGGGCCCAGGGCTGCTGGCCTTCTAGAGGTGCAGCTGCACGGGCCTCCTACCATCTGAACTACAAAGCCTGTTTCTTGCCATAG
Seq C2 exon
GAGAAAAAATCAGAGCTCATACCTAGCAAGGTGGCGTCCCTGTCTGACAGCTACCTTGACCAGACCTCTTCAGCCTCCAGCATGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-16-22,16-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTGGAGCGCCAGAAG
R:
GCTCATGCTGGAGGCTGAAG
Band lengths:
268-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains