HsaALTA1043306-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000167113 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr9:128325779-128332282:+
Coord C1 exon
chr9:128325779-128325881
Coord A exon
NA
Coord C2 exon
chr9:128332153-128332282
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
GGGAGGCTCATGGTTGTCAGAGG
3' ss Score
-1.95
Exon sequences
Seq C1 exon
GGAGCGTCCCCGGATTTCGACATCCACCCTCGACCTGGGCAAGCTCCAGAGCCTGCCGGAAGGCTCCCTCGGTCGCGAGTATCTCCGTTTCCTGGATGTGAAC
Seq A exon
NA
Seq C2 exon
AGGGTCTCCCCAGACACCCGAGCACCCACCCGCTTCGTGGATGATGAGGAGCTAGCGTATGTGATTCAGCGGTACCGGGAGGTGCACGACATGCTTCACACCCTGCTGGGGATGCCCACCAACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167113-8-14,8-13,8-12-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=PD(37.0=69.8)
A:
NA
C2:
PF050198=Coq4=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCGAGTATCTCCGTTTCCT
R:
CCGGTACCGCTGAATCACATA
Band lengths:
109-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains