HsaALTA1043520-4/5 @ hg38
Alternative 3'ss
Gene
ENSG00000167535 | CACNB3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:1403]
Coordinates
chr12:48825660-48826518:+
Coord C1 exon
chr12:48825660-48825769
Coord A exon
chr12:48826245-48826423
Coord C2 exon
chr12:48826424-48826518
Length
179 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
CCATTCCTCTGCCTGTCCAGGCT
3' ss Score
7.24
Exon sequences
Seq C1 exon
GATCTCCATCACCCGAGTCACAGCCGACCTCTCCCTGGCAAAGCGATCTGTGCTCAACAATCCGGGCAAGAGGACCATCATTGAGCGCTCCTCTGCCCGCTCCAGCATTG
Seq A exon
GCTTCGATGAATGCCCTTTTCCTCCAATTCCTTCCTGTCCACCATTCGGGAGCCCTCAAAGCCTGCTGGAGTGAGCAGTGGGCAGAGCTCCTGGTGAGCACTGCTGCTGCCTCCCTCCATAGCGGAAGTGCAGAGTGAGATCGAGCGCATATTTGAGCTGGCCAAATCCCTGCAGCTAG
Seq C2 exon
TAGTGTTGGACGCTGACACCATCAACCACCCAGCACAGCTGGCCAAGACCTCGCTGGCCCCCATCATCGTCTTTGTCAAAGTGTCCTCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167535-32-45,32-44,32-43,32-42,32-41-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(31.4=76.2)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCATCACCCGAGTCACAG
R:
CTTTGGTGAGGACACTTTGACA
Band lengths:
203-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains