HsaALTA1043915-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000167992 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr11:61268922-61271760:-
Coord C1 exon
chr11:61271675-61271760
Coord A exon
chr11:61269015-61269079
Coord C2 exon
chr11:61268922-61269014
Length
65 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
CGTTGCTGTTTCTTTTGCAGGGC
3' ss Score
12.59
Exon sequences
Seq C1 exon
GCTGCTCTCTTGACGACAACGGGGTTGAGTTTCCGATTGGACAGATCTGGTCGCCTGGTGACCCCTGTGAGTTATGCATCTGCCAG
Seq A exon
GGCGGGGAGGCAGGGGCCGGTGTCACCGGTGGGGTCTTGGTGAAGTTCCTCCTTCCTCCAGGCAG
Seq C2 exon
ATGGCTCGGTGAGCTGCAAGAGGACAGACTGTGTGGACTCCTGCCCTCACCCGATCCGGATCCCTGGACAGTGCTGCCCAGACTGTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167992-27-28,27-27,27-26-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(46.6=93.1)
A:
NA
C2:
PF0009313=VWC=PD(50.0=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACAACGGGGTTGAGTTTC
R:
CTGCTGAACAGTCTGGGCAG
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains