HsaALTA1043997-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000168036 | CTNNB1
Description
catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]
Coordinates
chr3:41239134-41239736:+
Coord C1 exon
chr3:41239134-41239354
Coord A exon
NA
Coord C2 exon
chr3:41239660-41239736
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GCCTTTCTCTCTTTATACAGCTG
3' ss Score
10.83
Exon sequences
Seq C1 exon
ATCCTAGCTATCGTTCTTTTCACTCTGGTGGATATGGCCAGGATGCCTTGGGTATGGACCCCATGATGGAACATGAGATGGGTGGCCACCACCCTGGTGCTGACTATCCAGTTGATGGGCTGCCAGATCTGGGGCATGCCCAGGACCTCATGGATGGGCTGCCTCCAGGTGACAGCAATCAGCTGGCCTGGTTTGATACTGACCTGTAAATCATCCTTTAG
Seq A exon
NA
Seq C2 exon
CTGTATTGTCTGAACTTGCATTGTGATTGGCCTGTAGAGTTGCTGAGAGGGCTCGAGGGGTGGGCTGGTATCTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168036-54-60,54-59,54-58-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGTGACAGCAATCAGC
R:
TCTCAGCAACTCTACAGGCCA
Band lengths:
107-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains