HsaALTA1044406-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000168702 | LRP1B
Description
LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:140851652-140867834:-
Coord C1 exon
chr2:140867590-140867834
Coord A exon
chr2:140851714-140851783
Coord C2 exon
chr2:140851652-140851713
Length
70 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ATTTCACTGTGTAATTACAGCTC
3' ss Score
5.82
Exon sequences
Seq C1 exon
GTCAGATGCTATTTATTCAGCCCTCTATGATGGAACAAACATGATAGAAATCATCCGAGGTCATGAATACCTTTCCCATCCCTTTGCTGTGTCTCTATATGGGAGTGAAGTCTACTGGACAGACTGGAGGACCAACACATTGTCCAAAGCCAATAAGTGGACAGGGCAGAATGTCAGTGTGATTCAGAAAACCAGTGCACAGCCATTTGACCTTCAGATATACCATCCCAGTCGCCAGCCACAGG
Seq A exon
CTCCCAATCCTTGTGCAGCTAATGATGGCAAAGGCCCCTGCTCTCACATGTGTCTAATCAATCACAATAG
Seq C2 exon
GAGTGCTGCCTGTGCGTGCCCCCACTTGATGAAGCTTTCTTCAGACAAGAAGACCTGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-45-74,45-73-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=86.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACAGACTGGAGGACCAA
R:
AAAGCTTCATCAAGTGGGGGC
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains