HsaALTA1045030-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000169862 | CTNND2
Description
catenin delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
Coordinates
chr5:11346595-11364890:-
Coord C1 exon
chr5:11364696-11364890
Coord A exon
NA
Coord C2 exon
chr5:11346595-11346627
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TCCCTACTTTCCTGTCGTAGCCC
3' ss Score
8.6
Exon sequences
Seq C1 exon
CTGGTTCCCGAGCCTCATACAGCAGCCAGCATGGGCACCTGGGCCCAGAGTTGCGGGCCCTGCAGTCCCCAGAACACCACATAGATCCCATCTATGAAGACCGCGTCTATCAGAAGCCCCCTATGAGGAGTCTCAGCCAGAGCCAGGGGGACCCTCTGCCGCCAGCACACACCGGCACCTACCGCACGAGCACAG
Seq A exon
NA
Seq C2 exon
CCCCATCTTCCCCTGGTGTCGACTCCGTCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169862-30-39,30-38-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=NA C2=0.818
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(7.5=3.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGGCCCAGAGTTGC
R:
AGTCGACACCAGGGGAAGATG
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains