HsaALTA1045248-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000170265 | ZNF282
Description
zinc finger protein 282 [Source:HGNC Symbol;Acc:HGNC:13076]
Coordinates
chr7:149207351-149210704:+
Coord C1 exon
chr7:149207351-149207470
Coord A exon
chr7:149210585-149210590
Coord C2 exon
chr7:149210591-149210704
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
ATGTCATTCTCTGTCCCCAGGAG
3' ss Score
11.5
Exon sequences
Seq C1 exon
ACGCGGAGGGCTCAGTCCCCAAGCCAGATGCTCCAGTCCAGGCTGAGCCCAGGGAAGAACCTTGTGTGTGGGAGCAGCGCCACCCCGAAGAGAGAGAAATCCCAATGGATCCCGAAGCAG
Seq A exon
GAGCAG
Seq C2 exon
AGCCCCTGGTGCCTGCGCAGGATGCGTCCTCCCAGGTGAAGCGTGAGGACACCCTGTGTGTCCGGGGTCAGCGGGGCCTGGAGGAAAGAGCCATCCCTACGGAATCCATTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170265-10-8,10-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.951
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCCCGAAGAGAGAGAAA
R:
GTGTCCTCACGCTTCACCTG
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains