HsaALTA1045683-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr11:64833738-64833977:-
Coord C1 exon
chr11:64833925-64833977
Coord A exon
chr11:64833834-64833836
Coord C2 exon
chr11:64833738-64833833
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CCTCTCTCTCCCACCCCCAGAAG
3' ss Score
10.29
Exon sequences
Seq C1 exon
ACACCAAGCCCTCAAACTCCCTGATTCCCTTCCTGTCCTTCCGGAGCTCAGAG
Seq A exon
AAG
Seq C2 exon
GATTCTGCCAAGGACCCTGGCATCTCAGGAGAGGCCACAAGGCATGGAGGAGAGCCAGATCTGAGGCCGGAGGGCCGACGCAGCCTGCGCATGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219-29-34,29-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGATTCCCTTCCTGTCCT
R:
CCTCAGATCTGGCTCTCCTCC
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains