HsaALTA1045831-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000171587 | DSCAM
Description
DS cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr21:40055725-40062899:-
Coord C1 exon
chr21:40062869-40062899
Coord A exon
chr21:40055837-40055840
Coord C2 exon
chr21:40055725-40055836
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTACCCCATTTTATTCCCAGTAA
3' ss Score
6.36
Exon sequences
Seq C1 exon
ATGCAAAGAGTTTAGCTGAAATGCTCATGAG
Seq A exon
TAAG
Seq C2 exon
AATACCCGGACTTCAGATACGTTAAGCAAGCAACAGCAGACCCTGCGAATGCACATCGACATACCCAGGGCTCAGCTTTTGATTGAAGAGAGAGACACGATGGAGACCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171587-67-63,67-62-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAGAGTTTAGCTGAAATGCT
R:
CTGAGCCCTGGGTATGTCGAT
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains