HsaALTA1046215-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000172262 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:HGNC:12915]
Coordinates
chr5:43067970-43079954:+
Coord C1 exon
chr5:43067970-43068217
Coord A exon
chr5:43079900-43079919
Coord C2 exon
chr5:43079920-43079954
Length
20 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTGTTTTGTTTTTGAGACAGAGT
3' ss Score
1.77
Exon sequences
Seq C1 exon
GAAACCTGAAACTGCCATTGAGCAGAAGGAAAACATCCCTTTCCAGAACCTTTCTCGTTTTTCTAAAAATCTGCACTTTTGGAAGTGATCCCCCAAAGAGACCTCCAGACTCTACCATGAGTGTCTCCAGCTGAACTCATCGTGTCTAATCCTCACCCTAGCTTATCCTGTTCAAATCATTTCCATCTTTTTCTGGATGAACCTGGGCGGATGTCAGACCAGAGAAGAGCACAGAATGTACCAGAGAG
Seq A exon
AGTCTTGCTCTGTCACCCAG
Seq C2 exon
GCTGAAGTGCACCCAGGCTGAAGTTGGAGGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172262-6-11,6-10,6-9-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACCCTAGCTTATCCTGT
R:
CAGCCTGGGTGCACTTCAG
Band lengths:
118-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains