HsaALTA1046745-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000173275 | ZNF449
Description
zinc finger protein 449 [Source:HGNC Symbol;Acc:HGNC:21039]
Coordinates
chrX:135359892-135360293:+
Coord C1 exon
chrX:135359892-135360005
Coord A exon
NA
Coord C2 exon
chrX:135360193-135360293
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
GTTTCTATTTCTTCTCTCAGGTT
3' ss Score
10
Exon sequences
Seq C1 exon
GATATCCATTACCAAAACTTGACATGAACTTCTCATTGGAGAATAGAGAAGAGCCATGGGTGAAGGAATTACAGGATTCTAAAGAAATGAAACAATTACTTGATTCCAAGATAG
Seq A exon
NA
Seq C2 exon
GTTTTGAGATCGGGATAGAAAATGAAGAAGATACTTCAAAACAGAAAAAAATGGAGACTATGTATCCATTTATTGTAACTTTAGAGGGGAATGCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173275-9-11,9-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.487 A=NA C2=0.330
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGCCATGGGTGAAGGA
R:
AGTATCTTCTTCATTTTCTATCCCGA
Band lengths:
103-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains