HsaALTA1046759-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000173391 | OLR1
Description
oxidized low density lipoprotein receptor 1 [Source:HGNC Symbol;Acc:HGNC:8133]
Coordinates
chr12:10166712-10169175:-
Coord C1 exon
chr12:10169074-10169175
Coord A exon
chr12:10166950-10166957
Coord C2 exon
chr12:10166712-10166949
Length
8 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TTAATGCAACTGTGATTCAGTAT
3' ss Score
2.57
Exon sequences
Seq C1 exon
GTCTTCAGTTTCTTTACTCTCCATGGTGGTGCCTGGCTGCTGCGACTCTAGGGGTCCTTTGCCTGGGATTAGTAGTGACCATTATGGTGCTGGGCATGCAAT
Seq A exon
TATCCCAG
Seq C2 exon
GTGTCTGACCTCCTAACACAAGAGCAAGCAAACCTAACTCACCAGAAAAAGAAACTGGAGGGACAGATCTCAGCCCGGCAACAAGCAGAAGAAGCTTCACAGGAGTCAGAAAACGAACTCAAGGAAATGATAGAAACCCTTGCTCGGAAGCTGAATGAGAAATCCAAAGAGCAAATGGAACTTCACCACCAGAATCTGAATCTCCAAGAAACACTGAAGAGAGTAGCAAATTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173391-3-9,3-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.353
Domain overlap (PFAM):
C1:
PF039389=OmpH=FE(23.3=100),PF101864=Atg14=FE(22.4=100),PF083915=Ly49=PU(23.9=80.0),PF145841=DUF4446=PU(22.2=68.6),PF148511=FAM176=PU(21.2=62.9),PF041117=APG6=PU(16.3=57.1)
A:
NA
C2:
NO
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGGTGCTGGGCATGCAAT
R:
GCTGAGATCTGTCCCTCCAGT
Band lengths:
95-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains