HsaALTA1047259-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000174450 | GOLGA6L2
Description
golgin A6 family-like 2 [Source:HGNC Symbol;Acc:HGNC:26695]
Coordinates
chr15:23441518-23442058:-
Coord C1 exon
chr15:23441979-23442058
Coord A exon
NA
Coord C2 exon
chr15:23441518-23441661
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCAAACCAACACTTTGCAGGAG
3' ss Score
4.83
Exon sequences
Seq C1 exon
AATCTGAAAAGTCTGAGATCCAGCTCAACGTGAAGGAGCTAAAAAGGAAACTGGAGAGGGCCAAGTTCCTGCTGCCACAG
Seq A exon
NA
Seq C2 exon
GAGGAGATGTGGAGGCAGGAGGAGGAGCTACGGGAGCAGGAAAAGAAGATACGGAAGCAGGAGGAGAAGATGTGGAGACAGGAGGAGAGACTGCGGGAGCAGGAGGGGAAGATGCGGGAGCAGGAGGAGAAGATGCGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174450-10-8,10-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.850
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAACTGGAGAGGGCCAA
R:
ATCTTCTCCTCCTGCTTCCGT
Band lengths:
108-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains