HsaALTA1047432-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000174844 | DNAH12
Description
dynein axonemal heavy chain 12 [Source:HGNC Symbol;Acc:HGNC:2943]
Coordinates
chr3:57502323-57504204:-
Coord C1 exon
chr3:57504016-57504204
Coord A exon
chr3:57502449-57502479
Coord C2 exon
chr3:57502323-57502448
Length
31 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
ATTATTTTTATTTGTGTTAGAAT
3' ss Score
5.33
Exon sequences
Seq C1 exon
CTAAAGGATCTATTAAGGAGAACTGTAGAAGGATTTGTAAAACTCTTTGACCCAAAAGATCAACAAAGGCTGCCAATATTTAAGATAGAATTGACATTTGATGACGACAAAATGGAATTTTATCCTACCTTTCAAGATTTGGAAGATAATGTCTTGAGTTTGGTGGAACGAATAGCCGAAGCTCTGCAG
Seq A exon
AATGTCCAAACAATCCCCTCTTGGCTATCAG
Seq C2 exon
GAACTTCAACACCAGTAAATCTTGACACAGAACTTCCTGAACACGTGTTACACTGGGCTGTTGATACACTGAAGGCAGCAGTACATCGGAACTTAGAAGGTGCAAGAAAGCATTATGAGACATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-9-17,9-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAACGAATAGCCGAAG
R:
CCGATGTACTGCTGCCTTCAG
Band lengths:
118-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains