HsaALTA1048074-1/4 @ hg38
Alternative 3'ss
Gene
ENSG00000176444 | CLK2
Description
CDC like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr1:155268094-155268359:-
Coord C1 exon
chr1:155268293-155268359
Coord A exon
NA
Coord C2 exon
chr1:155268094-155268146
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TCTTGAGAACCCAGCAAAAGCCT
3' ss Score
-12.67
Exon sequences
Seq C1 exon
ATGAAATCGTTAGCACCTTAGGAGAGGGGACCTTCGGCCGAGTTGTACAATGTGTTGACCATCGCAG
Seq A exon
NA
Seq C2 exon
CCTCTCCTGCCAACTTACAGGGGTGGGGCTCGAGTTGCCCTGAAGATCATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176444-20-21,20-20,20-19,20-18-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(6.9=95.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATCGTTAGCACCTTAGGAGAGG
R:
AATGATCTTCAGGGCAACTCGA
Band lengths:
116-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains