HsaALTA1048091-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000176472 | ZNF575
Description
zinc finger protein 575 [Source:HGNC Symbol;Acc:HGNC:27606]
Coordinates
chr19:43533795-43534501:+
Coord C1 exon
chr19:43533795-43533902
Coord A exon
chr19:43534337-43534405
Coord C2 exon
chr19:43534406-43534501
Length
69 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAG
5' ss Score
6.23
3' ss Seq
AGTGTGATCCCTCATTTTAGGCC
3' ss Score
8.5
Exon sequences
Seq C1 exon
GTCCCCCCTCTATCCTCCACGGCCCCATCCAAGCCAGGGATGAAATTTAACGGCAAGAAGGGCGCAGTTGACGCGGCGTCAATGAACTGAGACTAAGTCAAAAGCCGG
Seq A exon
GCCCTCCAACCCTATCCCCATCAGCCTGGTCATCACCGGCGTCACCCCCGCCCCGCGCCCTGCCCCTAG
Seq C2 exon
GTTCCTGTGCCAGCAAGATGCTGGAGCGAGGCGCGGAGTCCGCGGCCGGGGCTACCGATCCTAGTCCCACTGGCAAGGAACCAGTGACCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176472-5-9,5-8,5-7-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.993
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGGATGAAATTTAACGGC
R:
TTTGGTCACTGGTTCCTTGCC
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains