HsaALTA1048394-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31112992-31114464:-
Coord C1 exon
chr12:31114396-31114464
Coord A exon
NA
Coord C2 exon
chr12:31112992-31113041
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TCACTTTTTCTGCTGAGCAGAGC
3' ss Score
4.74
Exon sequences
Seq C1 exon
CTTGAAAACAAGGGCCAAGTGATGAAGACTGAAGTCAAGAATGACCATGTTCTTTTCTACTTGGAAAAT
Seq A exon
NA
Seq C2 exon
AGCAACCTTGTGTTCAACATTCAGCCAGCCCCAGGCATGGTCTACGATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359-42-45,42-44-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(28.9=100)
A:
NA
C2:
PF076779=A2M_recep=PD(38.2=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAAAACAAGGGCCAAGTGA
R:
GGGCTGGCTGAATGTTGAACA
Band lengths:
100-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains