HsaALTA1048526-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr12:7444097-7451055:-
Coord C1 exon
chr12:7451004-7451055
Coord A exon
chr12:7444215-7444217
Coord C2 exon
chr12:7444097-7444214
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTATTGTCATTTCCAAATAGCAG
3' ss Score
5.01
Exon sequences
Seq C1 exon
GAGGTCTGAAAACATTGGGCCATCATTTCAACATGACAACGGTGAATTGGAG
Seq A exon
CAG
Seq C2 exon
ATCTGTTTTCACCTCATGAGCAGTTCTGAGATTATATATAAGAGGACCCAGGAGTTACATCAGGACTCAGGAAGAGATAGACCCATAATGATGCTGCCTCAAAACTCGTGGCATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675-4-5,4-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCATCATTTCAACATGACA
R:
CCTGATGTAACTCCTGGGTCCT
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains