HsaALTA1048611-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000177984 | LCN15
Description
lipocalin 15 [Source:HGNC Symbol;Acc:HGNC:33777]
Coordinates
chr9:136763870-136764464:-
Coord C1 exon
chr9:136764393-136764464
Coord A exon
NA
Coord C2 exon
chr9:136763870-136763965
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
TCCATGGCATCTGACTGCAGGGT
3' ss Score
5.15
Exon sequences
Seq C1 exon
ATCCTGACCCTGCTCTGGGCGCCCACGGCTCAGGCTGAGGTTCTGCTGCAGCCTGACTTCAATGCTGAAAAG
Seq A exon
NA
Seq C2 exon
GGTCTTCCTGGGCAAGAAGGACCACCTGTCCATGTCCACCAGGGCCATCAGGCCCACAGAGGAGGGCGGCCTCCACGTCCACATGGAGTTCCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177984-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006118=Lipocalin=PU(31.9=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCTGAGGTTCTGCTG
R:
GGGAACTCCATGTGGACGTG
Band lengths:
137-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains