HsaALTA1048778-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2424089-2425036:+
Coord C1 exon
chr19:2424089-2424257
Coord A exon
chr19:2424807-2425001
Coord C2 exon
chr19:2425002-2425036
Length
195 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
TTTCAGAGCGCTCATATTAGGTG
3' ss Score
0.67
Exon sequences
Seq C1 exon
ACTGTGGCCTGGCGCCGGCCGCGCTCACCAGGATTGTGGGCGGCAGCGCAGCGGGCCGTGGGGAGTGGCCGTGGCAGGTGAGCCTGTGGCTGCGGCGCCGGGAACACCGTTGCGGGGCCGTGCTGGTGGCAGAGAGGTGGCTGCTGTCGGCGGCGCACTGCTTCGACGT
Seq A exon
GTGGTGACGGCTGCAGTTCCCGGTGCCGCCTCGGTGCCTGATGGGGGAGACTGAGCCCATTCCCAGACCGACAGCCAGAGACCAAGAGGCCAATAACCCTGCCCAGGGTGCCAGCCGGCCGCTGGGGGACACCACAGGGGCGGGGGCCGGGGGCGTGGGGGCTCGGGCCGACGCCTGTCCTCGCGCGCCCCGCAG
Seq C2 exon
CTACGGGGACCCCAAGCAGTGGGCGGCCTTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297-28-27,28-26,28-25-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.8=78.9)
A:
NA
C2:
PF0008921=Trypsin=FE(39.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCGCTCACCAGGATTG
R:
CTAGGAAGGCCGCCCACT
Band lengths:
186-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains