HsaALTA1049474-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000180777 | ANKRD30B
Description
ankyrin repeat domain 30B [Source:HGNC Symbol;Acc:HGNC:24165]
Coordinates
chr18:14843024-14848929:+
Coord C1 exon
chr18:14843024-14843096
Coord A exon
NA
Coord C2 exon
chr18:14848716-14848929
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CTATCTCCTCCTTGAGACAGATT
3' ss Score
2.99
Exon sequences
Seq C1 exon
CCTGCCACTGAAATGCAAAACTCTGTTCCAAATAAAGGCTTAGAATGGAAGAATAAACAAACATTGAGAGCAG
Seq A exon
NA
Seq C2 exon
ATTCAACTACCCTATCAAAAATCTTGGATGCACTTCCTTCTTGTGAAAGAGGAAGGGAACTTAAAAAAGATAACTGTGAACAAATTACAGCAAAAATGGAACAAACGAAAAATAAGTTTTGTGTACTACAAAAGGAACTGTCAGAAGCGAAAGAAATAAAATCACAGTTAGAGAACCAAAAAGCTAAATGGGAACAAGAGCTCTGCAGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180777-53-55,53-54-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.840 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCACTGAAATGCAAAACT
R:
AGTGCATCCAAGATTTTTGATAGGGT
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains