HsaALTA1050205-1/8 @ hg38
Alternative 3'ss
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105454193-105458371:+
Coord C1 exon
chr14:105454193-105454310
Coord A exon
NA
Coord C2 exon
chr14:105458270-105458371
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
GCCACACTTCCTCCCTGTAGGCG
3' ss Score
9.54
Exon sequences
Seq C1 exon
GATTTCTTCTTCTATTCTCTAGTCTACGACCCACAGCAGAAGACCCTGCTGGCAGATAAAGGAGAGATTCGAGTAGGAAACCGGTACCAGGCAGACATCACCGACTTGTTAAAAGAAG
Seq A exon
NA
Seq C2 exon
GCGAGGAGGATGGCCGAGACCAGTCCAGGTTGGAGACCCAGGTGTGGGAGGCGCACAACCCACTCACAGACAAGCAGATCGACCAGTTCCTGGTGGTGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-18-33,18-32,18-31,18-30,18-29,18-27,18-24,18-23-1/8
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.113 A=NA C2=0.064
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(11.8=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
NA
C2:
PF0144819=ELM2=FE(61.8=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTACGACCCACAGCAGAA
R:
TTGTCTGTGAGTGGGTTGTGC
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains