HsaALTA1050711-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger DHHC-type containing 23 [Source:HGNC Symbol;Acc:HGNC:28654]
Coordinates
chr3:113947901-113948963:+
Coord C1 exon
chr3:113947901-113948190
Coord A exon
chr3:113948794-113948819
Coord C2 exon
chr3:113948820-113948963
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CTTACGCCTCATGGTGACAGGTG
3' ss Score
5.59
Exon sequences
Seq C1 exon
GGGGCACCCGGAAGCGCGCGTGGACCTGGCGCACCGAGCCGGGCGGGCGGAGGGGCGGTTGGGACGGCGCGGGGAGGCGGGCGCGCCGCCCGGGCCGCGGCGGGCTGTGGTCACAGGTGGGCGGCTGCGGCGAGGGAGCGGCCGAGCGGAGCCCGGGTCCCGGAGACTCCTGCCGTCACGCCCGGGGCTCCGCGTAGCAGAGATCGGGAGACGCGTCTGTGCCTCCGGGGAAGCCGACCCATCTCCCCTCCGCCTCTTTGGCTGCAGTTGCACCTCCGGCCAGAGGGCAG
Seq A exon
GTGCAAATCATGACACAGAAGGGCAG
Seq C2 exon
TATGAAGCCTGTGAAGAAAAAGAAAACCGAAGAACCTGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGGAATGGGGAAAAGAACCACGTGGCTACTTGTTTGTGTGATTGTCAAGATCTGGATGAAGGGTGTGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307-1-5,1-3,1-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.180
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCCCTCCGCCTCTTTG
R:
TATGTACTCGCAGCAGCACAG
Band lengths:
120-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains