HsaALTA1050725-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000184347 | SLIT3
Description
slit guidance ligand 3 [Source:HGNC Symbol;Acc:HGNC:11087]
Coordinates
chr5:168685717-168687116:-
Coord C1 exon
chr5:168686979-168687116
Coord A exon
chr5:168685885-168685927
Coord C2 exon
chr5:168685717-168685884
Length
43 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CATTCTCTCCTGCCTTCCAGTGG
3' ss Score
9.31
Exon sequences
Seq C1 exon
CTGCGAGTGTGTCCCTGGCTACAGCGGGAAGCTCTGTGAGACAGACAATGATGACTGTGTGGCCCACAAGTGCCGCCACGGGGCCCAGTGCGTGGACACAATCAATGGCTACACATGCACCTGCCCCCAGGGCTTCAG
Seq A exon
TGGACCCTTCTGTGAACACCCCCCACCCATGGTCCTACTGCAG
Seq C2 exon
ACCAGCCCATGCGACCAGTACGAGTGCCAGAACGGGGCCCAGTGCATCGTGGTGCAGCAGGAGCCCACCTGCCGCTGCCCACCAGGCTTCGCCGGCCCCAGATGCGAGAAGCTCATCACTGTCAACTTCGTGGGCAAAGACTCCTACGTGGAACTGGCCTCCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184347-66-90,66-89-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(33.3=23.4),PF0000822=EGF=PU(88.2=63.8)
A:
NA
C2:
PF0000822=EGF=PD(8.8=3.7),PF0000822=EGF=WD(100=38.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACATGCACCTGCCCC
R:
GATGAGCTTCTCGCATCTGGG
Band lengths:
147-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains