HsaALTA1050726-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000184347 | SLIT3
Description
slit guidance ligand 3 [Source:HGNC Symbol;Acc:HGNC:11087]
Coordinates
chr5:168671198-168673331:-
Coord C1 exon
chr5:168673177-168673331
Coord A exon
NA
Coord C2 exon
chr5:168671198-168671445
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
GCCTCTCTGCCTTGCGCCAGGGC
3' ss Score
7.85
Exon sequences
Seq C1 exon
TGTGGAGACAGTGAATGATGGGCAGTTTCACAGTGTGGAGCTGGTGACGCTAAACCAGACCCTGAACCTAGTAGTGGACAAAGGAACTCCAAAGAGCCTGGGGAAGCTCCAGAAGCAGCCAGCAGTGGGCATCAACAGCCCCCTCTACCTTGGAG
Seq A exon
NA
Seq C2 exon
GGCACGGACCGGCCTCTAGGCGGCTTCCACGGATGCATCCATGAGGTGCGCATCAACAACGAGCTGCAGGACTTCAAGGCCCTCCCACCACAGTCCCTGGGGGTGTCACCAGGCTGCAAGTCCTGCACCGTGTGCAAGCACGGCCTGTGCCGCTCCGTGGAGAAGGACAGCGTGGTGTGCGAGTGCCGCCCAGGCTGGACCGGCCCACTCTGCGATCAGGAGGCCCGGGACCCCTGCCTCGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184347-71-95,71-94,71-93-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(40.3=100)
A:
NA
C2:
PF0221019=Laminin_G_2=PD(25.6=34.4),PF126612=hEGF=WD(100=13.5),PF0000822=EGF=PU(31.6=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCAAAGAGCCTGGGGAA
R:
TTGATGCGCACCTCATGGATG
Band lengths:
127-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains