HsaALTA1051989-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr9:129899993-129900547:-
Coord C1 exon
chr9:129900426-129900547
Coord A exon
chr9:129900097-129900104
Coord C2 exon
chr9:129899993-129900096
Length
8 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TTGTGTTTTCCTTTCTTGAGCAG
3' ss Score
0.64
Exon sequences
Seq C1 exon
GCCTGGCTGGCTGAGGTTGAAGGCCGGCTCCCAGCACGCAGCGAGCAGGCGCGCCGGCAGAGCGGACTGTACGACAGCCAGAACCCACCCACAGTCAACAACTGCGCCCAGGACCGTGAGAG
Seq A exon
CAGCCCAG
Seq C2 exon
ATGGCAGTTACACAGAGGAGCAGAGTCAGGAGAGTGAGATGAAGGTGCTGGCCACGGATTTTGACGACGAGTTTGATGATGAGGAGCCCCTCCCTGCCATAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239-61-67,61-66,61-65-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.752
Domain overlap (PFAM):
C1:
PF154561=Uds1=PD(11.2=24.4),PF0218511=HR1=PD(1.6=2.4)
A:
NA
C2:
PF146041=SH3_9=PU(11.8=12.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCACCCACAGTCAACAAC
R:
GCCAGCACCTTCATCTCACTC
Band lengths:
93-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains