HsaALTA1052271-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000187950 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:HGNC:23080]
Coordinates
chr12:29496556-29497686:-
Coord C1 exon
chr12:29497623-29497686
Coord A exon
chr12:29496675-29496948
Coord C2 exon
chr12:29496556-29496674
Length
274 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
CTAAATTTGCATCTTCCCAGAGT
3' ss Score
5.3
Exon sequences
Seq C1 exon
ATGGGCCTGCTGGCCAGTGCTGGTTTGTTGCTGTTGCTGGTCATCGGCCACCCCAGAAGCCTAG
Seq A exon
AGTAAGCCCCAAGTCACCTACCAGAGGCAGCGCTGGCTCCTTCCTGCCCAGTGGTAACACAGGCTGAAAGGGAGCAGACAGGAGGCAAATTCCGGTCAACCCAGGTGACTGTGGGATATTCTGAAGAAAATATTGAGAGAAGAATGTGGTAGTCTGCAGCTAAGTGCTATCAGAATGTCTGTGCCAGGCCAGGAAAATCCAAATGGGAAATCTTGGTAAAGTGAACTCTTACATAAGGCTCTGTGTGTGCACACACACATGCTCTTCTACACAG
Seq C2 exon
GACTGAAGTGTGGAATTCGCATGGTCAACATGAAAAGTAAGGAACCTGCCGTGGGATCTAGATTCTTCTCTAGAATTAGTAGTTGGAGAAATTCAACAGTGACTGGACATCCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187950-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(5.7=35.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGCTGGTTTGTTGCTGT
R:
TGGATGTCCAGTCACTGTTGA
Band lengths:
164-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains