HsaALTA1052678-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000189042 | ZNF567
Description
zinc finger protein 567 [Source:HGNC Symbol;Acc:HGNC:28696]
Coordinates
chr19:36687612-36689497:+
Coord C1 exon
chr19:36687612-36687634
Coord A exon
NA
Coord C2 exon
chr19:36689401-36689497
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCTTTACTCCCTATAGGCAGTCT
3' ss Score
0.33
Exon sequences
Seq C1 exon
AGACGCCCGGCCGGCAACCGAAG
Seq A exon
NA
Seq C2 exon
TCTTTAGCTCTCATGGATTGGGAGCTGGGAAAGGAATGAGAAGACAGAAGTCAGAGACAAGAAGAGGCTAACATGACTGATACCACTATAATTTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189042-0-2,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains