HsaALTA1053365-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000196604 | POTEF
Description
POTE ankyrin domain family member F [Source:HGNC Symbol;Acc:HGNC:33905]
Coordinates
chr2:130119995-130127864:-
Coord C1 exon
chr2:130127709-130127864
Coord A exon
chr2:130120409-130120608
Coord C2 exon
chr2:130119995-130120408
Length
200 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGA
5' ss Score
4.71
3' ss Seq
TGACTTTTCTCTTCAAACAGATT
3' ss Score
9.95
Exon sequences
Seq C1 exon
GCTTTTCTGGCTTTGCCCGTCTAGCTGCTCCAAGCCAGGCTGGAGGAGGAGGAGAAGGAATCACCTGTGGTACGCTGGAGCCTGCATGTGGCGTGACTCTGCAGCTCGCCTCGTGTGACTGATGGCAGCCACGGAGACTGCAGCTCGACAGGAGTG
Seq A exon
ATTGGAAACCCGGAGTTACCTGCTAGTTGGTGAAACTGGTTGGTAGACGCGATCTGTTGGCTACTACTGGCTTCTCCTGGCTGTTAAAAGCAGATGGTGGTTGAGGTTGATTCCATGCCGGCTGCCTCTTCTGTGAAGAAGCCATTTGGTCTCAGGAGCAAGATGGGCAAGTGGTGCTGCCGTTGCTTCCCCTGCTGCAG
Seq C2 exon
GGAGAGCGGCAAGAGCAACGTGGGCACTTCTGGAGACCACGACGACTCTGCTATGAAGACACTCAGGAGCAAGATGGGCAAGTGGTGCCGCCACTGCTTCCCCTGCTGCAGGGGGAGTGGCAAGAGCAACGTGGGCGCTTCTGGAGACCACGACGACTCTGCTATGAAGACACTCAGGAACAAGATGGGCAAGTGGTGCTGCCACTGCTTCCCCTGCTGCAGGGGGAGCAGCAAGAGCAAGGTGGGCGCTTGGGGAGACTACGATGACAGTGCCTTCATGGAGCCCAGGTACCACGTCCGTGGAGAAGATCTGGACAAGCTCCACAGAGCTGCCTGGTGGGGTAAAGTCCCCAGAAAGGATCTCATCGTCATGCTCAGGGACACTGACGTGAACAAGCAGGACAAGCAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196604-1-7,1-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.115
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127962=Ank_2=PU(33.0=17.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATCACCTGTGGTACGCTG
R:
ACCACTTGCCCATCTTGTTCC
Band lengths:
297-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains