HsaALTA1053577-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000196912 | ANKRD36B
Description
ankyrin repeat domain 36B [Source:HGNC Symbol;Acc:HGNC:29333]
Coordinates
chr2:97540433-97541983:-
Coord C1 exon
chr2:97541911-97541983
Coord A exon
NA
Coord C2 exon
chr2:97540433-97540469
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TTGACACGGTTTTATTTTAGTTT
3' ss Score
7.03
Exon sequences
Seq C1 exon
GCTACAAGTGTCAAGAAAGATTCTGTTTCGAATATAGCCACAGAAATAAAGGATGGACAAATACGTGGGACAG
Seq A exon
NA
Seq C2 exon
TTTTAGACATATGACAAATCATACCATGCTTGAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196912-42-41,42-40-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.858 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACAAGTGTCAAGAAAGATTCTGT
R:
TTTCAAGCATGGTATGATTTGTCA
Band lengths:
108-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains