HsaALTA1053708-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000197050 | ZNF420
Description
zinc finger protein 420 [Source:HGNC Symbol;Acc:HGNC:20649]
Coordinates
chr19:37078418-37080388:+
Coord C1 exon
chr19:37078418-37078570
Coord A exon
chr19:37080342-37080344
Coord C2 exon
chr19:37080345-37080388
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CATTTTTCTTTTTCTGAGAGTAG
3' ss Score
-4.68
Exon sequences
Seq C1 exon
TTTCCGTTAGTTTGCGAGATTTGGAGGCCTCGCGTGGGGAGAGGGCCGCGTCTGTGGAGGAGCTTGGCTCCGCACCTGCTGGGCTGGCGAACCCGAAATTGGGCTTGGAACCCGGGAGCCAGATCTTGGACCCTGAACTGCACCTCTGTCAAG
Seq A exon
TAG
Seq C2 exon
AGCCCAGAGGAGAAAGAATGGCTGTTTCAGTAGCAATGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197050-4-15,4-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGCGAACCCGAAATT
R:
GCCATTCTTTCTCCTCTGGGC
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains