HsaALTA1054069-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000197497 | ZNF665
Description
zinc finger protein 665 [Source:HGNC Symbol;Acc:HGNC:25885]
Coordinates
chr19:53182884-53193356:-
Coord C1 exon
chr19:53193312-53193356
Coord A exon
chr19:53182940-53182943
Coord C2 exon
chr19:53182884-53182939
Length
4 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
TCTCTTTCATGTTACCCAAGGTA
3' ss Score
5.25
Exon sequences
Seq C1 exon
AAACCCGGAAGCAGATCTCTTGGAGTGAAGGCTGTTAGTCGCCGC
Seq A exon
GTAG
Seq C2 exon
AACCCTGGAAGAAGAGGAAGAGGAAGGCAAAGGAGTCAGGGATGGCTCTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197497-0-17,0-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.300
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGAAGCAGATCTCTTGGA
R:
GAAGAGCCATCCCTGACTCCT
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains