HsaALTA1054347-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133534309-133536802:+
Coord C1 exon
chr9:133534309-133534917
Coord A exon
chr9:133536563-133536711
Coord C2 exon
chr9:133536712-133536802
Length
149 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GGGTTCATCCTTCCCAACAGGGT
3' ss Score
8.86
Exon sequences
Seq C1 exon
TCCCCGGTAACCTCAGGCCAGCGGCTGCTCCGTCTGGACACCCGACATGTGGCCCCCAGTTCTGGACCCGGGAAGAAGGCCTCCCTGCTCGCCGCTCCTGGGCCGCCGCCGCCGGCAGCAGCCAACAGGCAGCTGGGCCGGCCTGGCCGGGCTCCAGAGGCGCAGAGCGGGTTAAAGTGTGCGCCAGGCCGGCCGGCGCGGGCGGGGGAGCGGCCTGGTGGGAAGTGTGAGTGTTCCTCCCCGTCTGCCTGACAGCTATAAAGGCGGCCGCCGGCGCAGAGCCGCCACTGGGCTGCGCCCCTCCCGGGAACCCCCTCTCTTGGATGCTCTTTGAAGTGGGAGAGGGAGGCGGCGCGGGGGAGGAGGGGAAGGGGAGAGGGAGGCCGGGCCGCAGCCTCTGCACTCACGCCGCCCCCGCACGCACAGCGCACCTGGCGCCGTCTGCCCTCCGCAGCGCTCGCCCCTTTCTCTGGGAGGACAACCTGCTGACCCGAAGCCAG
Seq A exon
GGTCTGCCAGACAACCACGACCAACTAGTCCCAGATAACCTTGAGGCCTGGGCACTGGCTGGGCCCCGAGGGCTCTTCCCAAAGCGTACCCTGGTCATCTGGAAGAGGATCGGAGCTGGCCTGGTGGTGACAGTGGCCTTGCTTCCTAG
Seq C2 exon
GATGGATGGCAGATGGCAATGTTCCTGCTGGGCCTGGTTCCTGCTGGTTCTGGCAGTTGTAGCTGGGGACACAGTGTCAACCGGGTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTCTCTTGGATGCTCTT
R:
CCAGCTACAACTGCCAGAACC
Band lengths:
256-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains