HsaALTA1054513-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000198003 | CCDC151
Description
coiled-coil domain containing 151 [Source:HGNC Symbol;Acc:HGNC:28303]
Coordinates
chr19:11423877-11426266:-
Coord C1 exon
chr19:11426144-11426266
Coord A exon
NA
Coord C2 exon
chr19:11423877-11424029
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TGACCTCAACCCACGAGCAGACC
3' ss Score
2.74
Exon sequences
Seq C1 exon
AACCAGCTGCAGTACCTAGAGGAGACCTTGGTTCGAGAGCGCAAGAAGCGGGAACGCTACATAAGTGAGTGCAAGAAGCGCGCCGAGGAGAAGAAACTGGAGAACGAGCGCATGGAGCGCAAG
Seq A exon
NA
Seq C2 exon
ACCCACCGCGAGCACCTGCTGCTACAGTCCGACGACACCATCCAGGACAGCCTGCATGCCAAGGAGGAGGAGCTGCGGCAGCGCTGGAGCATGTACCAGATGGAGGTGATCTTTGGCAAGGTCAAGGACGCCACTGGCACTGACGAGACGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198003-12-21,12-20,12-19-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=NA C2=0.340
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCTGCAGTACCTAGAGG
R:
CGTCCTTGACCTTGCCAAAGA
Band lengths:
252-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains