HsaALTA1054706-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000198218 | QRICH1
Description
glutamine rich 1 [Source:HGNC Symbol;Acc:HGNC:24713]
Coordinates
chr3:49056990-49057875:-
Coord C1 exon
chr3:49057792-49057875
Coord A exon
NA
Coord C2 exon
chr3:49056990-49057038
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
ACTCTCTCTTTCCAGCACAGTTC
3' ss Score
4.01
Exon sequences
Seq C1 exon
CAGCAGTCTCCGCAACAGGTCTCGGCTCAGCTCTCCCCACAACTCACCGTTCACCAGCCTACTGAGCAACCCATCCAGGTCCAG
Seq A exon
NA
Seq C2 exon
TTCATGAATGGCAACATCCACATTCCAGTGGCTGTGCAGGCTGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198218-34-22,34-21-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCTCTCCCCACAACTCA
R:
CTGCACAGCCACTGGAATGTG
Band lengths:
98-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains