HsaALTA1054868-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000198440 | ZNF583
Description
zinc finger protein 583 [Source:HGNC Symbol;Acc:HGNC:26427]
Coordinates
chr19:56413959-56414393:+
Coord C1 exon
chr19:56413959-56414085
Coord A exon
chr19:56414342-56414344
Coord C2 exon
chr19:56414345-56414393
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CCCCTTTTGTTTTTTGTAAGCAG
3' ss Score
3.27
Exon sequences
Seq C1 exon
GATTTGGTGACATTTGGGGATGTGGCTGTAAATTTCTCTCAAGAGGAATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAGGAAAGTGATGTTGGAGAACTACAGGAGCTTGGTATCATTGG
Seq A exon
CAG
Seq C2 exon
GAGTTTCTGTTTCTAAGCCAGATGTGATCTCATTATTGGAGCAAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198440-10-10,10-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGCTGAACCCTGCTCAG
R:
TCACATCTGGCTTAGAAACAGA
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains