HsaALTA1054948-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000198586 | TLK1
Description
tousled like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr2:171056471-171058197:-
Coord C1 exon
chr2:171058151-171058197
Coord A exon
chr2:171056561-171056566
Coord C2 exon
chr2:171056471-171056560
Length
6 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TTCCTTTTTCTTTTACTCAGTAC
3' ss Score
6.84
Exon sequences
Seq C1 exon
GAAAAAGTATTGGGGGACGTGGCCACAAAATTAGCGACTATTTTGAA
Seq A exon
TACCAG
Seq C2 exon
GGTGGAAATGGCTCAAGTCCAGTAAGAGGCATACCTCCTGCAATCCGTTCTCCTCAAAATTCACATTCACATTCCACTCCTTCCTCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198586-32-31,32-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=0.990
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTATTGGGGGACGTGGC
R:
TGAGGAGAACGGATTGCAGGA
Band lengths:
101-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains