HsaALTA1055856-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000204344 | STK19
Description
serine/threonine kinase 19 [Source:HGNC Symbol;Acc:HGNC:11398]
Coordinates
chr6:31981004-31982503:+
Coord C1 exon
chr6:31981004-31981188
Coord A exon
chr6:31982305-31982452
Coord C2 exon
chr6:31982453-31982503
Length
148 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
ATCCTGTCTGTTCTCCCCAGGTT
3' ss Score
10.85
Exon sequences
Seq C1 exon
CATCTCTACCACTTCAGGAACCCTCCTCCGCCTGCCAGAGACATGAAGATTCTGCTCATCATTGCTCAGCTCCTCAGAGTGGGCCGGGAGGGGACTAGAAGAGCTGCATGATGGTGGCTGAGACAGGGTCACCTTGGGAAGGCTTGGGAGCCAGGATGAGTGTCGGGCTCTCGTGTGTGCAAAAG
Seq A exon
GTTGCTCTTGTTCTCTCCTTCTGTGGTTCATCTGGGGGTCCCCCTATCGGTGGGGGTGCAGCTCCAGGATGTGCCCCGAGGACAGGTAGTGAAAGGATCAGTGTTCCTGAGAAACCCATCTCGTAATAATGTCCCCTGCTCCCCAAAG
Seq C2 exon
GTGGACTTCACCCTTAGCTCAGAAAGAGACTTCGCACTCCTCAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204344-24-26,24-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF104944=Stk19=PD(5.0=68.8)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTACCACTTCAGGAACCCT
R:
CTGGAGACTGAGGAGTGCGAA
Band lengths:
234-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains