HsaALTA1055963-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000204519 | ZNF551
Description
zinc finger protein 551 [Source:HGNC Symbol;Acc:HGNC:25108]
Coordinates
chr19:57685262-57686835:+
Coord C1 exon
chr19:57685262-57685385
Coord A exon
chr19:57686162-57686539
Coord C2 exon
chr19:57686540-57686835
Length
378 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTCAATTGGATTTTCCTAGGAC
3' ss Score
6.38
Exon sequences
Seq C1 exon
GGTATGACCTTTGAGGATGTGGCCATTTATTTCTCCCAAGAAGAGTGGGAGCTCCTTGATGAGTCTCAGAGGTTCCTGTACTGCGATGTGATGCTGGAGAACTTTGCACATGTAACATCCCTGG
Seq A exon
GACTGGACAACAGCAGTCTTCTGTACAGCACATACATCACTAGCAGACAAAGTCCTGCTGAGGGCTTTGGCAGAGAGTGAGTTGGAGACCCTCCTTCTCCTCCTGTGCTATACCTCATCCTTGTATCCTTTGCGTGATGAGATGACATCTCTAAAATCTTAAAAAACCCAGTACTTCAAACCAGCCTATTCCTCCCCAGTTCCGTTGTTCTCAGAACAGTTCCATGCACTCAGTTCTTGTGTCTCACACATTTTTGTGATACATCTTTCTCCTTCCATGAAAGTCAGCATGCATTTCATCAGCATTTCTCTGCTTTCAGGTTATTGCCATGGAATGGAGAATGAGGCGATAGCTTCTGAGCAGAGTGTATCTATACAG
Seq C2 exon
GTCAGGACTTCTAAGGGCAATACACCCACCCAGAAAACTCACCTCAGTGAGATTAAGATGTGTGTCCCAGTCTTGAAAGACATTTTGCCTGCGGCTGAGCACCAAACCACATCCCCTGTGCAAAAGTCATACTTGGGTAGCACAAGCATGAGAGGCTTCTGCTTCAGTGCTGACCTTCACCAGCATCAAAAGCATTACAATGAAGAAGAGCCCTGGAAAAGGAAGGTGGATGAGGCTACATTTGTGACCGGCTGCAGATTCCATGTGTTGAATTATTTCACCTGTGGGGAGGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204519-4-4,4-3,4-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAAGAGTGGGAGCTCCT
R:
AATCTGCAGCCGGTCACAAAT
Band lengths:
349-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains