HsaALTA1056070-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000204632 | HLA-G
Description
major histocompatibility complex, class I, G [Source:HGNC Symbol;Acc:HGNC:4964]
Coordinates
chr6:29829816-29830406:+
Coord C1 exon
chr6:29829816-29829932
Coord A exon
chr6:29830271-29830377
Coord C2 exon
chr6:29830378-29830406
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ATCCCGCCCTGGGTCTGCAGTCA
3' ss Score
5.51
Exon sequences
Seq C1 exon
AGCAGTCTTCCCTGCCCACCATCCCCATCATGGGTATCGTTGCTGGCCTGGTTGTCCTTGCAGCTGTAGTCACTGGAGCTGCGGTCGCTGCTGTGCTGTGGAGAAAGAAGAGCTCAG
Seq A exon
TCACACATTTCTGGAAACTTCTCGAGGGTCCAAGACTAGGAGGTTCCTCTAGGACCTCATGGCCCTGCCACCTTTCTGGCCTCTCACAGGACATTTTCTTCCCACAG
Seq C2 exon
ATTGAAAAGGAGGGAGCTACTCTCAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204632-8-13,8-12,8-11-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(8.1=20.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTCCCTGCCCACCATC
R:
CCTGAGAGTAGCTCCCTCCTT
Band lengths:
141-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains