HsaALTA1056666-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000213221 | DNLZ
Description
DNL-type zinc finger [Source:HGNC Symbol;Acc:HGNC:33879]
Coordinates
chr9:136362989-136363719:-
Coord C1 exon
chr9:136363487-136363719
Coord A exon
chr9:136363129-136363132
Coord C2 exon
chr9:136362989-136363128
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CACCAGCTACCCTGTCCCAGCCA
3' ss Score
1.56
Exon sequences
Seq C1 exon
GCGGGATGCTGCGGACTGCGCTGCGCGGCGCGCCGAGGTTGCTGAGTCGCGTGCAGCCCCGGGCGCCCTGCCTGAGGCGGCTGTGGGGCCGCGGGGCCCGTCCAGAGGTCGCGGGGAGGCGGCGGGCCTGGGCCTGGGGCTGGCGGCGCTCAAGCTCCGAGCAGGGGCCGGGGCCCGCGGCGGCTCTGGGGCGCGTGGAGGCGGCGCACTACCAGCTCGTCTACACCTGCAAG
Seq A exon
CCAG
Seq C2 exon
GTCTGCGGGACTAGGTCCTCCAAGCGCATCTCCAAGCTGGCCTATCACCAAGGCGTGGTCATTGTGACCTGCCCCGGCTGCCAGAACCACCATATCATCGCTGACAACCTGGGCTGGTTCTCGGACCTGAATGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213221-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF051807=zf-DNL=PU(10.3=9.2)
A:
NA
C2:
PF051807=zf-DNL=FE(67.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCGTCTACACCTGCAAG
R:
CGGGGCAGGTCACAATGAC
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains