HsaALTA1056732-3/5 @ hg38
Alternative 3'ss
Gene
ENSG00000213638 | ADAT3
Description
adenosine deaminase, tRNA specific 3 [Source:HGNC Symbol;Acc:HGNC:25151]
Coordinates
chr19:1905214-1906128:+
Coord C1 exon
chr19:1905214-1905439
Coord A exon
chr19:1905963-1906025
Coord C2 exon
chr19:1906026-1906128
Length
63 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCAGGTTTTTGTATCACAGGCC
3' ss Score
6.34
Exon sequences
Seq C1 exon
CATGTGAGCGCAGTGCCGGAGCGGGGCGGGGCGAGGCGGCGGCGCGCAGTGCCTACTAGCAATTGTAGTCCTTGCCCCACCTTGGCCTGGCGAAGATCCCGCCCCTGGAACTACGCTCCCGTCGTGCTCCGCGGCTCCAGGCGGAGACGAGGCGGGGTGAGGTGGGTTGGGCCGGGCCGGTTGCTAAGACTTGGCGAAGCGCTGCGCTCGCGCCCGGATCCCTCAG
Seq A exon
GCCCCCAGTTATCTCCCACACACTACCCCGAGGACCGAGGTTCCCCGCTGTCTTGCAGAGAAG
Seq C2 exon
GCCTCCTTGTAGGGTGGCCAGAAACAGAGGATCGACTCCGTGGAAACAAGGACGGCTGGGTGCAGTTCCTCACCCTATAACCCCAGCACTTTGGGAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213638-0-4,0-3,0-2,0-1,0-0-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTGCTAAGACTTGGCGAA
R:
TGCTGGGGTTATAGGGTGAGG
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains