HsaALTA1056963-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9567490-9570790:+
Coord C1 exon
chr12:9567490-9569202
Coord A exon
chr12:9570763-9570765
Coord C2 exon
chr12:9570766-9570790
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CAAAACACTGTCACCTTTAGCAG
3' ss Score
3.29
Exon sequences
Seq C1 exon
ACAGGGGGGCCATCCCTTAGAAACCCTGTCTAGTTGTTTAGAGACGTAGGCCACCGGCCTCAGCCAGGTCCCCACAGTTTGGGTTAAAAGTCCAGCTGCCATCTTTTCTCCCTCTGACACATACAATGGGAAAGGCTTTGTCAGTTCGGGTAGCCCCAGGGCTGGGGCTGCCAGAAGTTTTTCCTTTAACTCATGAAAGCCTTGCTGTTGTTGGCATCCCCTTTCCAAAGCTTCCCGGTCCCTGCCCCTTTTGTGACCTCATACAAAGGCTTGGCTAATACTGCAAAGTTTGGAATCCACAGTCTCCAAAACCCCACAGCTCCTAAGAATTCTGTCACCTGCCTTCTGCCCTTAGGCTCCCGTAGATTGCAAAGGACATGCTTTCTTTGTGATCCCGGGCTGCATTCGGACCCCTGTCGGATAGTGAATTCCAAATAATGTACCTACCGTCGGCAGATCTGAGCTTTCTTCTTGGACACCTAATACCCACAGTCCTCCAG
Seq A exon
CAG
Seq C2 exon
TGAAGGATCCAGTGAGATTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776-43-47,43-46-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAATGTACCTACCGTCGGCA
R:
CTGGAAAATCTCACTGGATCCTTCA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains