HsaALTA1057187-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000217576 | RP11-248G5.8
Description
NA
Coordinates
chr13:52169987-52171248:-
Coord C1 exon
chr13:52171158-52171248
Coord A exon
chr13:52170057-52170099
Coord C2 exon
chr13:52169987-52170056
Length
43 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
ATTCTTTGTGTATTTGCTAGGAT
3' ss Score
6.78
Exon sequences
Seq C1 exon
GAGCTGACTAAGGCTTTGGAACAGAAACCAGATGATGCACAATATTATTGTCAAAGAGCTTATTGTCACATTCTTCTTGGGAGTTACTATG
Seq A exon
GATCTGTAAATAACTGACGAAAAACCCATCTGTTTCTACGTAG
Seq C2 exon
TTGCTGTTGCCGACACAAAGAAGTCTTATGAACTCAATCCAAATAATTCCACTGCTATGCTGAGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576-48-41,48-40-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAGAAACCAGATGATGCA
R:
CCTTTTCTCAGCATAGCAGTGGA
Band lengths:
145-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains