HsaALTA1058170-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000229571 | PRAMEF25
Description
PRAME family member 25 [Source:HGNC Symbol;Acc:HGNC:49179]
Coordinates
chr1:13068677-13070907:+
Coord C1 exon
chr1:13068677-13068754
Coord A exon
chr1:13070817-13070824
Coord C2 exon
chr1:13070825-13070907
Length
8 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GTCAATAAAAGCTTCTAAAGACC
3' ss Score
-6.13
Exon sequences
Seq C1 exon
ACCCAAAGTCTTCAAGCCTGGAGTACCTGCCTGGTTCTTCCTGAGGTCTGAGCACCTTCTAGACTACATCCAGATCTG
Seq A exon
ACCCACAG
Seq C2 exon
GAGAGACCCAAAGTCTTCAAGCCTGGAGTTCCTGCCTGGTTCTTCCTGAGGTCTGAGCACCTTCTAAACTACATCCAGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229571-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGAGGTCTGAGCACC
R:
TCAGGAAGAACCAGGCAGGAA
Band lengths:
92-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains