HsaALTA1058252-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000230124 | ACBD6
Description
acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:HGNC:23339]
Coordinates
chr1:180287276-180288517:-
Coord C1 exon
chr1:180288270-180288517
Coord A exon
NA
Coord C2 exon
chr1:180287276-180287402
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
TTTTTTTTTTTTTGAGACAGGGT
3' ss Score
4.19
Exon sequences
Seq C1 exon
CCTCTGCCTGTGAGTTTCTGGATATTGTAGAGCTGCTGCTCCAGTCTGGTGCTGACCCCACTCTCCGAGACCAGGATGGCTGCCTGCCAGAGGAGGTGACAGGCTGCAAAACAGTTTCTTTGGTGCTGCAGCGGCACACAACTGGCAAGGCTTAATCAAAAGACTGGAAAACTGCAGTCTGTAATAGCATAAGGCTTCCATTATGAAAGAAAACTACAAAAATAATACTTCTTTTCCACCCGTCTTTG
Seq A exon
NA
Seq C2 exon
GGTCTCGCTATGTCACCCAGGCTGAAGTGCAGTGGTATGATCATGGTTCACTACAGCCTCAACCTCCTGGGCTCAAGGAATCCTCCCACCTCAGCCTCCTGTGTAGCTGAGATAGCTGGGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230124-38-42,38-41-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(24.7=44.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTTTTCCACCCGTCTTTG
R:
ATTCCTTGAGCCCAGGAGGTT
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains